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Current Featured Topic: Epigenetics and Embryonic Stem Cells

本主题由 System 于 2008-7-1 13:25 解除限时置顶

Current Featured Topic: Epigenetics and Embryonic Stem Cells

This is my current featured topic !

I just wanna talk about "Epigenetics and Embryonic Stem Cells".

If you like, welcome joining.

Please enjoying ... ... ...

Accordingly this topic will focus on four aspects of epigenetic modifications of chromatin associated with ES cells: chromatin modification and especially those changes associated peculiarly with stem cells and their early differentiation, X-chromosome inactivation, small RNAs and their possible role in maintaining pluripotency, and finally imprinting.

[ 本帖最后由 vnewjay 于 2008-5-10 20:43 编辑 ]
本帖最近评分记录
  • llecmets stem +1 曲高和寡啊,呵呵 2008-6-13 16:24

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DNA methylation in ES Cells

Human embryonic stem (hES) cells originate during an embryonic period of active epigenetic remodeling. DNA methylation patterns are likely to be critical for their self-renewal and pluripotence. We compared the DNA methylation status of 1536 CpG sites (from 371 genes) in 14 independently isolated hES cell lines with five other cell types: 24 cancer cell lines, four adult stem cell populations, four lymphoblastoid cell lines, five normal human
tissues, and an embryonal carcinoma cell line. The DNA methylation profile clearly distinguished the hES cells from all of the other cell types. A subset of 49 CpG sites from 40 genes contributed most to the differences among cell types. Another set of 25 sites from 23 genes distinguished hES cells from normal differentiated cells and can be used as biomarkers to monitor differentiation.  Thus, hES cells have a unique epigenetic signature that may contribute to their developmental potential.
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Multiple transcription factors maintain stem cell identity

Mouse embryonic stem (ES) cell self-renewal depends upon extrinsic signals from leukemia inhibitory factor (LIF) and bone morphogenetic protein (BMP). These molecules activate, respectively, the nuclear localization of the latent transcription factor STAT3 and the expression of Id genes. In contrast, the homeodomain proteins Oct4 and the recently identified Nanog are intrinsic factors required for maintenance of the undifferentiated state. When overexpressed, Nanog allows ES cells to self-renew in the absence of the otherwise obligatory LIF and BMP signals. However, the highest efficiency of ES cell self-renewal occurs when Nanog is overexpressed and cells are exposed to LIF. In contrast, when Oct4 is overexpressed, ES cells differentiate in a similar manner to the differentiation that occurs upon LIF withdrawal. These observations are brought together to provide a genetic model of ES cell self-renewal centered upon interactions between Oct4, STAT3 and Nanog.

Anyway, the transcription factors OCT4, SOX2, and NANOG have essential roles in early development and are required for the propagation of undifferentiated embryonic stem (ES) cells in culture. To gain insights into transcriptional regulation of human ES cells, we have identified OCT4, SOX2, and NANOG target genes using genome-scale location analysis. We found, surprisingly, that OCT4, SOX2, and NANOG co-occupy a substantial portion of their target genes. These target genes frequently encode transcription factors, many of which are developmentally important homeodomain proteins. OCT4, SOX2, and NANOG collaborate to form regulatory circuitry consisting of autoregulatory and feedforward loops.

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Questions:

Are epigenetic changes important?

What about in the reversal of differentiation to iPS cells?

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回复 4# 的帖子

surely,epigentic changes are important,but that process,in my opinion, is just a necessary part of the ES program(whatever forwards or backwards) ;because the genomes' modification changed so fiercely,it seems to be impossible for ES to made the dicision by epigentic changes at the beginning.

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the miRNA may play a leading role instead

MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells

Nature Structural & Molecular Biology 15, 259 - 267 (2008)

Loss of microRNA (miRNA) pathway components negatively affects differentiation of embryonic stem (ES) cells, but the underlying molecular mechanisms remain poorly defined. Here we characterize changes in mouse ES cells lacking Dicer (Dicer1). Transcriptome analysis of Dicer-/- cells indicates that the ES-specific miR-290 cluster has an important regulatory function in undifferentiated ES cells. Consistently, many of the defects in Dicer-deficient cells can be reversed by transfection with miR-290 family miRNAs. We demonstrate that Oct4 (also known as Pou5f1) silencing in differentiating Dicer-/- ES cells is accompanied by accumulation of repressive histone marks but not by DNA methylation, which prevents the stable repression of Oct4. The methylation defect correlates with downregulation of de novo DNA methyltransferases (Dnmts). The downregulation is mediated by Rbl2 and possibly other transcriptional repressors, potential direct targets of miR-290 cluster miRNAs. The defective DNA methylation can be rescued by ectopic expression of de novo Dnmts or by transfection of the miR-290 cluster miRNAs, indicating that de novo DNA methylation in ES cells is controlled by miRNAs.
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